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And which Linux kernel did you run, surely not 2.4.2?
We've long run custom kernels and maintained our own kernel source.
Drivers for our custom hardware
Oh look, we got a dump truck of really cheap RAM, but not all the bits are usable. Can we work around the bad RAM cells in software and use it anyway?
Hardware or kernel bugs that only showed up with many machines (we do upstream such changes)
Custom memory management and containers before they were available in the mainstream kernel.
We do reboot machines in staggered fashion for kernel updates.